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BioC2013
Seattle, USA
2013-07-17 ~ 2013-07-19
Instructors
- TBA
Description
Developer Day is July 17, 2013. Conference is July 18-19, 2013. This conference highlights current developments within and beyond Bioconductor, an international open source and open development software project for the analysis and comprehension of high-throughput genomic data.
Materials
Developer Day
rhdf5-supported variant calling - Paul Pyl
Quick Fix Debugging, Debugging (solved)
BatchJobs demo - Michael Lawrence
Tackling Big Data with R - Simon Urbanek
knitr / Yihui Xie
Debugging in R and C
profiling.md, line-profiling.R
Debugging in R: Presentation | R Code
c-debugging.md, c-crash.R, c-valgrind.R, c-valgrind.c
Morning Talks
Big Science on a Small Budget / Tim Triche
A computational Bayesian approach to gene regulatory network estimation / Matthew McCall
Dissection of xenograft tumor and stromal response to VEGF inhibition from RNA-Seq data / Gregoire Pau PDF Keynote
Computational anaylses of high-throughput spatial proteomics data / Laurent Gatto
Associating differential ER binding with clinical outcome in breast cancer / Rory Stark
Detection and characterization of complex rearrangements in tumor genomes / Aaron Quinlan
Afternoon Labs
Cheminformatics of Drug-like Small Molecules / Thomas Girke
Differential analysis of ChIP-seq data / Rory Stark
minfi and shinyMethyl: a winning pair of R-packages for the analysis of methylation data / Jean-Philippe Fortin
Slides | R Code |
ReportingTools / Jessica Larson
DESeq2/DEXSeq / Alejandro Reyes, Wolfgang Huber
Presentation: PDF | key |
Reproducible Research with RStudio, knitr, and git / Jeffrey Johnston
RGalaxy/AnnotationHubServer / Dan Tenenbaum
RGalaxy Lab vignette | AnnotationHubServer presentation
Variant Calling with R/Bioconductor / Michael Lawrence
Annotations in Bioconductor / Marc Carlson, Valerie Obenchain
Annotation Resources | Annotating Genomic Ranges