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- 2010
- Introduction to R and Bioconductor
Introduction to R and Bioconductor
Seattle, USA
2010-01-27 ~ 2010-01-29
Instructors
- Chao-Jen Wong
- Herve Pages
- Marc Carlson
- Martin Morgan
- Nishant Gopalakrishnan
- Patrick Aboyoun
- Seth Falcon
Description
This course introduces R and Bioconductor tools for analysis of high-throughput microarray and short read sequence data. It is designed for beginning or intermediate users of R and Bioconductor. A major theme for this workshop is reproducible research. To that end, participants will develop their own R package containing work developed during the course.
Materials
- Day 1: R Package (day1_0.0.1.tar.gz)
- Day 2: R Package (day2_0.0.11.tar.gz)
- Day 3: R Package (day3_0.0.3.tar.gz)
- String Basics
- String Basics (solutions)
- High throughput sequence I/O, manipulation, and quality assessment
- ShortRead Lab: Working with Aligned Sequences
- ShortRead Lab: Working with Aligned Sequences (solutions)
- Exploratory Data Analysis of Coverage
- Sequence Annotation
- Finding RNA-seq Hot Spots
- Simple RNA-seq Expression Measures
- ChIP-seq peak identification and analysis